rs52176718 SNP Detail

Summary

• ID
  rs52176718
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:58269850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACCACTCA CTGAGGTGTT
  CAGCAAATTC AGGGTCCAGT AGAGTGATCA GGCTGTTGAG CATGTCCAGA TTCTTGCCTA
  CACCGATGTT GATGACACAG CTGTGCTCCT GTACAAGACG GGACCAGGGA TCAGTCCTCC
  TGGTTCAACT TGAGGGCATC ATGGAAGAAA GCCAACCTCT CTCAGGCCTA ACTCTGAGAG
  R
  CCACATGTCT GGGTCTTCCG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TCTGTCTGTC
  TGTCTGTCTG TCTGTCTGTC TGTGTAAGAG TGTGACCCAG AACAGCCCTC CTGAACTCTG
  AGGCTTCCAG TGCTCACCCA CTGACCTACA GAGTGTTTGG GGGCTGGAGG AAGTGTCTGA
  GGCTGTCAGT GCCTTGGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61405426	NES16792472	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52176718					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61405426	NES16792472	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:58269850 () rs orientation: forward

Symbol	Name	Function Class
D9Mit232	DNA segment, Chr 9, Massachusetts Institute of Technology 232	within coordinates
D9Mit232.1	DNA segment, Chr 9, Massachusetts Institute of Technology 232.1	84 bp proximal
D9Mit248	DNA segment, Chr 9, Massachusetts Institute of Technology 248	within coordinates
Gm53527	predicted gene, 53527	within coordinates
Tbc1d21	TBC1 domain family, member 21	within coordinates