rs52178714 SNP Detail

Summary

• ID
  rs52178714
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30338924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CAGCCTTCCA AATGCTGGAA TCCTTTCCAA GCATAAAGGA
  TTTTTTTGTT TGTTTGTTTT GTTTTTTGGG TTTTTTTGTT TGGTTTGTTT TTTGTTTTTT
  G
  GTTTGTTTGT TTGTTTGTTT GTTTGTTTTT GAGACAGGGT TTCTCTGTAT AGCCCTGGCT
  GTCCTGGAAC TCACTCTGTA GACCAGGTTG GCCTCCAACT C                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146398967	ENSMUSSNP6015159	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52178714					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30338924 () rs orientation: forward

Symbol	Name	Function Class
Ptpa	protein phosphatase 2 protein activator	1105 bp downstream
Rr554328	regulatory region 554328	848 bp distal
Rr554329	regulatory region 554329	1810 bp proximal