rs52178716 SNP Detail

Summary

• ID
  rs52178716
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156570068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTA TTTTGGGTTC TTTAGGGGAG
  Y
  GGGGAGTTCG AGACAGGGTT TCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145803881	ENSMUSSNP1962401	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320072650	CHEV_1_158672629	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52178716					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156570068 () rs orientation: forward

Symbol	Name	Function Class
Gm39683	predicted gene, 39683	1906 bp upstream
Gm69913	predicted gene, 69913	959 bp downstream
Rr421237	regulatory region 421237	within coordinates
Rr421238	regulatory region 421238	1412 bp proximal
Rr421239	regulatory region 421239	1769 bp proximal