rs52179624 SNP Detail

Summary

• ID
  rs52179624
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40122344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTACATAGA GAGTTCCAGT
  CTAGCTAGGG ATAAACGTAA GGTCCTAACA AGAGGAAGAA GAAGGAAGAG GAGAAGGAGG
  AAGAAGAATA GGAGGAGAGA AGGAGGAGGA AGAGGAGAAG AGGAGAAGGA GGAAGAGGGA
  GAGGAGGAAG AGGAGAAGGA AGAAGAACAA CAACTACTAC TATTACTACC ACTACTAAAG
  Y
  TCAAACTTAG TAGTGACAGT AGCAAGCCTC AGCAGGACCC ATGGAACAAT GACTGCTTCT
  CCTGTATCCC TCCATCTCCA TTCATGGGCC CAGCAGCAAT AGAATGTTCA GTTCAACTTC
  CCCACCAGTG CATGGGAAAT GACCAAGATC CTTTGAGGTT CAAGATGCCT GTTACCCAAG
  ATGCTTGTTG CAAATGCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60723918	NES16366461	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52179624					SNP	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60723918	NES16366461	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40122344 () rs orientation: forward

Symbol	Name	Function Class
Gm16894	predicted gene, 16894	within coordinates
Il1r2	interleukin 1 receptor, type II	1528 bp upstream
Rr410012	regulatory region 410012	1813 bp distal
Rr410013	regulatory region 410013	1275 bp proximal
Tssr62	transcription start site region 62	1526 bp upstream
Tssr6411	transcription start site region 6411	1549 bp upstream
Tssr6412	transcription start site region 6412	1580 bp upstream
Tssr6413	transcription start site region 6413	1591 bp upstream