rs52179737 SNP Detail

Summary

• ID
  rs52179737
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:14927843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTACTTTG GGTCCTTCCT
  ACCATCTCCC CAATTTCTTC CCCACCCTTC CACTTTCCAG ATGATCACAT TGAGCCTTAA
  ATCCTTTAAT GCATTTTGGT ATAAAAGAAT AAAAGATCTT TCATCTTTAT TTAATGTGCC
  ACAACAAAGC AATCATTTGT ATTTTATGCT TCTGTAGGAT TGAATTGCTG TTATTCATAT
  M
  GATTCCTGTT TCATTTATAT GTGTGTGATA TATATTACAT AATTATATAC AATATATAAT
  AATTAAATAT ATATCCATTT GTATTTCTAT GAGTATAACT TTCTAATGGA TAAAACATTA
  TTTTATGCTT GAACATTCTC TCAGACCTTA CTTTTCCTCC AGGGCCTTTT ATGGGCCTTT
  CTTTTTTTTA ACCTCTGACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146046306	ENSMUSSNP2674895	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321046992	CHEV_4_14854990	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52179737					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:14927843 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14053	CpG island 14053	1994 bp proximal
Gm68732	predicted gene, 68732	1884 bp downstream
Rr589248	regulatory region 589248	1518 bp proximal