rs52180728 SNP Detail

Summary

• ID
  rs52180728
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88374625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACTGAAAA TGTACTCCGC
  TCACTATTCC TTATTGCATA GCTAGTGGTT TATCTCTGGA TTCCCTCATT TCGGAGCTGT
  CAGTGATTTT CTACTTGAAT TTCATTGATT GCTTTCTAGG CTTAAGATAG ATAAAACATT
  ACAAAGCTTC AGAAAGGGAG GGAGAAAAGT GAATTCTAAG GGACGCACAG GAGAGGTAAG
  Y
  CTACGGTATT GTGCTATGTG TAAATTACAG ATTTTTTTCT TTTTTTCTTT TTTTCTTTTT
  CTTTTTTTTT TTCTTTTTTC TTTCTTGGTT TTTTGAGACA GAATTTCTCT GTGTAGTCCT
  GGCTGTCCTG GAACTCATTC TGTAGATCAG GCTGGCCTCT AACTCAGAAA TCCGCCTGCC
  TCTGCCTCCC ACGTGCTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62964601	NES17417172	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52180728					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62964601	NES17417172	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88374625 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9636	CpG island 9636	552 bp distal
Fbxo11	F-box protein 11	1906 bp upstream
Rr333911	regulatory region 333911	376 bp proximal
Rr333912	regulatory region 333912	1176 bp proximal
Rr333913	regulatory region 333913	1976 bp proximal
Rr340317	regulatory region 340317	within coordinates
Rr344409	regulatory region 344409	1066 bp proximal
Rr370332	regulatory region 370332	610 bp downstream
Rr405528	regulatory region 405528	797 bp downstream
Tssr149795	transcription start site region 149795	1468 bp upstream
Tssr149796	transcription start site region 149796	1366 bp upstream
Tssr149797	transcription start site region 149797	1324 bp upstream
Tssr149798	transcription start site region 149798	1204 bp upstream
Tssr149799	transcription start site region 149799	1110 bp upstream