rs52182883 SNP Detail

Summary

• ID
  rs52182883
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:35016430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTACATATTT GATAAATAGA AGGCCAGCTT GGACTATATA
  GAAAGACCCT ATCTTATACC CACTCCTGCC AAAAAATAAA AATAAAATAA ATTTTAAAAA
  A
  GCAGTAAGAG CTAAATACCT AATAAAAAAT GGAACAAAAC AAAACAAAAA AAAAAAAAAG
  GCAGTAAGAG TCTCAGTGAA AATGTCTCAG AGGTATAGC                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322156910	CHEV_7_36102024	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52182883					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:35016430 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18869	CpG island 18869	1062 bp proximal
Gpatch1	G patch domain containing 1	within coordinates
Tssr72030	transcription start site region 72030	1403 bp downstream