rs52183155 SNP Detail

Summary

• ID
  rs52183155
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128518194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTATG AGGATTAGCC AAAGGAGGAA
  A
  GAAAGAAAGA AAGAAAGAAA GAAAG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145462269	ENSMUSSNP6889646	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss319965172	CHEV_1_130487034	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52183155					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128518194 () rs orientation: forward

Symbol	Name	Function Class
Cpgi697	CpG island 697	327 bp proximal
Cxcr4	C-X-C motif chemokine receptor 4	within coordinates
Gm57160	predicted gene, 57160	1918 bp upstream
Rr28453	regulatory region 28453	within coordinates
Rr366855	regulatory region 366855	626 bp upstream
Rr396264	regulatory region 396264	1695 bp upstream
Tssr196	transcription start site region 196	1779 bp downstream
Tssr8536	transcription start site region 8536	497 bp upstream
Tssr8537	transcription start site region 8537	820 bp upstream
Tssr8538	transcription start site region 8538	848 bp upstream
Tssr8539	transcription start site region 8539	862 bp upstream
Tssr8540	transcription start site region 8540	1988 bp upstream
Tssr13461	transcription start site region 13461	1995 bp upstream
Tssr13462	transcription start site region 13462	1825 bp upstream
Tssr13463	transcription start site region 13463	1725 bp upstream
Tssr13464	transcription start site region 13464	1683 bp upstream
Tssr13465	transcription start site region 13465	1670 bp upstream
Tssr13466	transcription start site region 13466	1599 bp upstream
Tssr13467	transcription start site region 13467	1557 bp upstream
Tssr13468	transcription start site region 13468	1471 bp upstream
Tssr13469	transcription start site region 13469	1417 bp upstream
Tssr13470	transcription start site region 13470	1327 bp upstream
Tssr13471	transcription start site region 13471	1255 bp upstream
Tssr13472	transcription start site region 13472	1187 bp upstream
Tssr13473	transcription start site region 13473	1172 bp upstream
Tssr13474	transcription start site region 13474	1111 bp upstream
Tssr13475	transcription start site region 13475	1090 bp upstream
Tssr13476	transcription start site region 13476	1078 bp upstream
Tssr13477	transcription start site region 13477	1012 bp upstream
Tssr13478	transcription start site region 13478	359 bp downstream
Tssr13479	transcription start site region 13479	388 bp downstream
Tssr13480	transcription start site region 13480	710 bp downstream
Tssr13481	transcription start site region 13481	1827 bp downstream