rs52183392 SNP Detail

Summary

• ID
  rs52183392
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:76474687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGAAAAAA GAAAGAAACA
  AACAAACAAT AAAAACAACA ACAAACCCCT GATGTCACTT TAGCTGCCTG TCCACACAGC
  AGCTAAAATG ACCGCAGACT TATGCCAATG TGAATATGCC TCAGAGGTGG ATTATTGAGT
  GGAAAGAAGA TGCAGAGGGA CTACCAGTTG GGTGGCATTT TATCAAGTTT TAAACATGCA
  R
  TGAAAGGTGG ATATAAAAGG TGTATGGATA CTCTATATAT TTTTTATAGA TAGAACAATA
  TATTATAGAT TGGATTTTTT TAAAGTTTTA TTTTATGTGT ATGGATGTAT GGCTTGCATG
  TATGTCTGTG AACCACATGT GTGCAGGGCC TACAGAGTCC AGTAGGGTGT GGCAGAACCC
  CTGGACCTAG ATGGTTGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63183977	NES17459540	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52183392					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63183977	NES17459540	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:76474687 () rs orientation: forward

Symbol	Name	Function Class
Rr347326	regulatory region 347326	687 bp distal
Rr355557	regulatory region 355557	1688 bp distal
Tssr151998	transcription start site region 151998	1439 bp upstream