rs52184691 SNP Detail

Summary

• ID
  rs52184691
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:32522563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCATGTCGCC TCAGGCGGGT GAGCGTGCGG CCGAGAGGAA
  GGCGGAGTGG AACGAGCCGC GGGCCGGCAG GGACCAGGGT GCGCGCGCCA GTCGTTTCAC
  C
  GAGCTGCAGC GGCCGCCACG GTCTGACAGG GCGCGCGGGA GGCCGGGCGT GGAGCGAGGG
  GCGGGCCAGC TTAGTCGGGG CGGGCGGCGC GAGCCGGGC                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss148847926	ENSMUSSNP3539134	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52184691					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32522563 () rs orientation: forward

Symbol	Name	Function Class
A730091E23Rik	RIKEN cDNA A730091E23 gene	239 bp upstream
Cpgi5422	CpG island 5422	within coordinates
Gmds	GDP-mannose 4, 6-dehydratase	mRNA-UTR
Rr369665	regulatory region 369665	231 bp upstream
Rr476844	regulatory region 476844	147 bp proximal
Rr476845	regulatory region 476845	150 bp proximal
Tssr121995	transcription start site region 121995	38 bp upstream
Tssr121996	transcription start site region 121996	16 bp upstream
Tssr121997	transcription start site region 121997	within coordinates