rs52185067 SNP Detail

Summary

• ID
  rs52185067
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:48769854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CAGGGCCTTT TCTTTTCCTT TCTTTTTTCC CTTCCCGTCC
  CTTCCCTTCC CTTCCCTTCC CTTCCCTTCC CTTCCCTTCC CTTCCCTTCT TTCTTTCTTT
  T
  TTTTTTTTGT TTTGGTTTTT CGAGATAGGA TTTCTCTGTG TAGTCCTGGC TGTCCAGGAA
  CTCACTTTGT AGCCAGGCTG GCCTCGAACT CAGAAATCCA C                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145717336	ENSMUSSNP4427070	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52185067					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48769854 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr370279	regulatory region 370279			492 bp downstream
Rr528303	regulatory region 528303			1130 bp distal
Tssr145120	transcription start site region 145120			417 bp downstream
Unc5cl	unc-5 family C-terminal like			Intron
				Noncoding-Transcript-Variant