rs52186857 SNP Detail

Summary

• ID
  rs52186857
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:134591803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGTCCTGT TTTGAAATAA AAAATGGATT AAAGGTATGT
  CTTTTTACTT CAGTGATCCT GATTAGAAGT GGATCTTTCC ACTTCAAATT AAGCAAAACA
  G
  ACAAACAAAC AAACAAACAA AAACACACAC ACACAAAAAC ACCCACACAC AAAACAAAAC
  AACAACACCA AAAACATCAA AAAAAAAAAA AGCAAAACA                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss145510678	ENSMUSSNP4025043	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs52186857					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134591803 () rs orientation: forward

Symbol	Name	Function Class
Rr418971	regulatory region 418971	858 bp proximal
Syt2	synaptotagmin II	Intron