rs52187409 SNP Detail

Summary

• ID
  rs52187409
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14949908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TGATTTATCT CAAAGACTTT TTGTTATCAT AATTGGAACA
  TGTCTTAGTA ACTTTATATG TTTTTTTTCT GATTATGTTA TATATACCCA TATATATGAA
  Y
  ATATGTGTGT ATATGTACAT ATGAATATGT ATATGTACAT ATGAATATAC ATACATATAT
  ACATAAATTT CCCCCACCTC CTGGGTTAGA AGGAAGTACA T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss134618291	ENSMUSSNP4660571	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52187409					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14949908 () rs orientation: forward

Symbol	Name	Function Class
Car2	carbonic anhydrase 2	1425 bp upstream
Cpgi12992	CpG island 12992	1167 bp proximal
Rr573721	regulatory region 573721	1664 bp distal
Rr573722	regulatory region 573722	1139 bp proximal
Rr573723	regulatory region 573723	1291 bp proximal
Rr573724	regulatory region 573724	1591 bp proximal
Rr573725	regulatory region 573725	1638 bp proximal
Tssr826	transcription start site region 826	1356 bp upstream
Tssr827	transcription start site region 827	1570 bp upstream
Tssr828	transcription start site region 828	1586 bp upstream
Tssr829	transcription start site region 829	1676 bp upstream
Tssr830	transcription start site region 830	1757 bp upstream
Tssr831	transcription start site region 831	1778 bp upstream
Tssr832	transcription start site region 832	1867 bp upstream
Tssr28466	transcription start site region 28466	1835 bp upstream
Tssr28467	transcription start site region 28467	1967 bp upstream