rs52187649 SNP Detail

Summary

• ID
  rs52187649
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:74997243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACCTAGGT ACTAAATATC
  TATGAAAAGT AGTTCAGCAA TTATTCAGCA CTGCCTCTTT TTTTAAGAAT AAAGAGTTTC
  AATTTTATTT TTTCTGCTTT TAAAAATTAA TTAAAGTATA ATTATATCAC TTCCCTCTTC
  CTTTTTCTTC TTTCAACATC TCCCATGTGC CCCTCTCACT GCCTCTCACA TTGATGGACT
  M
  TTTTGACTAT TATTGTTTTA CACACACACA CACACACACA CACACACACA CACGCACGCA
  CGCACGCACA CACACAAAGT TGCTGAGTCT ATCTAGTGTT GTTTGTGTGT ATATGATTTC
  TGGGCTGAAC ATTCAGTACA GAGTGGTTTC CTTCTGTTTT TAACAATGAC CTAGAAGAAC
  AGAGATTTCA CTTTAAAGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss136639771	ENSMUSSNP1819386	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs52187649					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:74997243 () rs orientation: forward

Symbol	Name	Function Class
Myo5a	myosin VA	within coordinates
Rr197390	regulatory region 197390	1243 bp distal
Rr201722	regulatory region 201722	158 bp proximal
Rr210694	regulatory region 210694	1643 bp distal