rs52187955 SNP Detail

Summary

• ID
  rs52187955
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25377899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GGTGGCTCAC AACCATCTGT AATGAGATCT GATGTCCTCT
  TCTGTGGATC TGAAGACAGC TACAGTGTAC TTAGATATAA TAATAAATAA ATCTAAAAAA
  A
  AAAGAAAGAA AGAAAGAAAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAA
  AGAAAGAAAG AAAGAAAGAA AGAAAGGAAG GAAGAAAGGA A                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145379380	ENSMUSSNP1274768	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52187955					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25377899 () rs orientation: forward

Symbol	Name	Function Class
Clcn7	chloride channel, voltage-sensitive 7	within coordinates
Mir12188	microRNA 12188	1578 bp upstream
Tssr143140	transcription start site region 143140	729 bp upstream