rs52188085 SNP Detail

Summary

• ID
  rs52188085
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66362546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATTT TCTGCCTTCC TGAGGAGAGA
  M
  CAGTCAGTGC CACCCTTAAG CCTTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss144494192	ENSMUSSNP4300616	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss319754084	CHEV_1_66369961	CHEVERUD	SCREENING_POP	f	SNP		C	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52188085					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66362546 () rs orientation: forward

Symbol	Name	Function Class
Gm10558	predicted gene 10558	within coordinates
Map2	microtubule-associated protein 2	within coordinates
Rr412442	regulatory region 412442	1658 bp distal
Rr412443	regulatory region 412443	457 bp distal
Rr412444	regulatory region 412444	within coordinates
Tssr7142	transcription start site region 7142	1672 bp downstream
Tssr7143	transcription start site region 7143	1648 bp downstream
Tssr7144	transcription start site region 7144	1631 bp downstream
Tssr7145	transcription start site region 7145	1581 bp downstream
Tssr7146	transcription start site region 7146	1567 bp downstream
Tssr7147	transcription start site region 7147	1526 bp downstream
Tssr7148	transcription start site region 7148	1407 bp downstream
Tssr7149	transcription start site region 7149	1375 bp downstream
Tssr7150	transcription start site region 7150	1343 bp downstream
Tssr7151	transcription start site region 7151	1314 bp downstream
Tssr7152	transcription start site region 7152	1297 bp downstream
Tssr7153	transcription start site region 7153	1268 bp downstream
Tssr7154	transcription start site region 7154	560 bp upstream