rs52188185 SNP Detail

Summary

• ID
  rs52188185
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:120125448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGTGCTC AGAAGTGGTG
  GCAGGATGGC TAGTGTCTAA CCTTTGATTT AATTTAAAAG TCAGGACCTG ATTATTCTAA
  AGTCATAGCA CAACTTCTAT ATTGTGTCTC TGTTATTGCT GGTATGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGCATTCA TATGTGTTTG TGTGTGTGTG TATTCATATG TGTGTGTGTG
  T
  ATATTTGTGT GCAAGTGTGT GCAGATGTGT GTGTGAGTCT GTGGAGGGGG TAGAAGTTGA
  CATGAGGTAC CTTTTGGGAC AGTCTCTCTC TGAACCTGGT GTTCACTGAT TGGCTAGACT
  CACTGACCAG GATGCTCTGT TATCTGCCGA CCTCTACCCC ATTCCTGTAC TGGGGTTGCA
  GGTGTGCACC ACTATACCTG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145313903	ENSMUSSNP1259814	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52188185					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:120125448 () rs orientation: forward

Symbol	Name	Function Class
Rr396237	regulatory region 396237	177 bp downstream
Rr417161	regulatory region 417161	109 bp distal
Rr417162	regulatory region 417162	348 bp distal