rs52189400 SNP Detail

Summary

• ID
  rs52189400
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77542083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTA GCTTTGAGTT ACATAGTAAG
  R
  CCTGGTCTTG GAGAAAGAAA GAAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss136659831	ENSMUSSNP6596499	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss323013586	CHEV_9_77482608	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs52189400					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77542083 () rs orientation: forward

Symbol	Name	Function Class
Gm68532	predicted gene, 68532	within coordinates
Klhl31	kelch-like 31	1931 bp upstream
Rr683389	regulatory region 683389	1209 bp proximal
Rr683390	regulatory region 683390	1710 bp proximal
Tssr86194	transcription start site region 86194	1668 bp upstream
Tssr86195	transcription start site region 86195	1693 bp upstream
Tssr86196	transcription start site region 86196	1735 bp upstream
Tssr86197	transcription start site region 86197	1774 bp upstream
Tssr86198	transcription start site region 86198	1818 bp upstream
Tssr86199	transcription start site region 86199	1820 bp upstream
Tssr86200	transcription start site region 86200	1835 bp upstream
Tssr86201	transcription start site region 86201	1912 bp upstream