rs52189748 SNP Detail

Summary

• ID
  rs52189748
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128048389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCACCACA CATTATTTAA
  AAAAAAAAAA AAAAAAAAAG CGTAAATCCG TTTCCCAGAG CCTCAGCATT CTCTTTGGAC
  AGAATGTGTC TACATTCAAG CTTACTGTTC TGTCTTCTGA GACAGAGTTA CTATGTAACC
  TTTGCAGGCC TCAAACTCTA GATCCTGCTG CCTCAATTTC CCAAGTGCCA GGTTGTGCTC
  M
  GTTTTTTTTT GTTGTTTTTT TTTTGTTGTT TTTGTTTTGT TTTTTTCGAG ACAGGGTTTC
  TCTGTATATC AGTTTTTTAT TATTATAGTT TGAGACAGGG TCTCAAGGAT CGGCCTGCCT
  CAGCCCGCGG AGTGCTGGGA TTAACAACAT GACTTGTGCT CATTATTATT ATTATTGTTA
  TTATTATTAT TATTATTATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382200146	MGP_WTSI_10_127649576	EVA_MGPV3	EVA_MGPV3	f	SNP	A	C	A	C	C	C	A	C	A	A	A	A	A	A	A	C	A	A	A	A	A	A	C	A	C	C	C	A	A	C	C	C	C	C	A	A	A	A	A	C	C	C	C	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs52189748					SNP	A	C	A	C	C	C	A	C	A	A	A	A	A	A	A	C	A	A	A	A	A	A	C	A	C	C	C	A	A	C	C	C	C	C	A	A	A	A	A	C	C	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382200146	MGP_WTSI_10_127649576	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128048389 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2387	CpG island 2387	466 bp distal
Cpgi2388	CpG island 2388	559 bp proximal
Rr402345	regulatory region 402345	509 bp downstream
Rr402346	regulatory region 402346	284 bp upstream
Spryd4	SPRY domain containing 4	726 bp upstream
Tssr99849	transcription start site region 99849	745 bp upstream
Tssr99850	transcription start site region 99850	697 bp upstream