rs52189886 SNP Detail

Summary

• ID
  rs52189886
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:21425163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACGGCTAT AAACGGTAAT
  GTAAATAACT GCAGGGTACC TGATAATGGG ACCCTGCACC CCCCAAAGGG ATACTGACCC
  AAGGGGTTGA GTACCACTGT GCTAGGTTTT TGGTTTGTTG GGTTTTTTTT GGGGGGGGGA
  GGGGTGTCTG TTTTTGTTGG GTTTTTTGTT GTTGTTTTTC GAGACAGGAT TTCTGTGTGT
  R
  GTCCTGGCTG TCCTGGAACT CACTCTGTAG ACCAGGCTGG CTTCACTGTG CTAATTTTTA
  AAAAACTCCT GATCCACTTT ATCATAACAA GTTTTCAGGA TAAGTCCCAA TTTTAAGTAG
  TCTTCAACAT TCACAAGTCA GTATTCAAAT TAAGATTCCA ATTTGAAATT CATCTTTGAT
  TTGACAATAG TCCATATCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss137298241	ENSMUSSNP3130045	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52189886					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21425163 () rs orientation: forward

Symbol	Name	Function Class
Adam17	a disintegrin and metallopeptidase domain 17	1530 bp upstream
Cpgi4477	CpG island 4477	955 bp distal
Gm49586	predicted gene, 49586	816 bp downstream
Tssr112932	transcription start site region 112932	1383 bp downstream
Tssr112933	transcription start site region 112933	905 bp downstream
Tssr115856	transcription start site region 115856	1670 bp upstream
Tssr115857	transcription start site region 115857	1644 bp upstream
Tssr115858	transcription start site region 115858	1616 bp upstream
Tssr115859	transcription start site region 115859	1570 bp upstream
Tssr115860	transcription start site region 115860	1545 bp upstream