rs52190719 SNP Detail

Summary

• ID
  rs52190719
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48769863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTTTTCCT TTCTTTTTTC CCTTCCCGTC CCTTCCCTTC
  CCTTCCCTTC CCTTCCCTTC CCTTCCCTTC CCTTCCCTTC TTTCTTTCTT TCTTTTTTTT
  T
  TTTTGGTTTT TCGAGATAGG ATTTCTCTGT GTAGTCCTGG CTGTCCAGGA ACTCACTTTG
  TAGCCAGGCT GGCCTCGAAC TCAGAAATCC ACCTGCCTC                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145717339	ENSMUSSNP5398487	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52190719					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48769863 () rs orientation: forward

Symbol	Name	Function Class
Rr370279	regulatory region 370279	501 bp downstream
Rr528303	regulatory region 528303	1139 bp distal
Tssr145120	transcription start site region 145120	426 bp downstream
Unc5cl	unc-5 family C-terminal like	within coordinates