rs52190827 SNP Detail

Summary

• ID
  rs52190827
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47038657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CCACATGGTG GCTCACAACC ATCCGTAACA AGATCTGACT
  CCCTCTTCTG GTGTCTGAAG ACAGCTACAG TGTACTTACA TATAATAATA AATAAATCTT
  A
  AAAAAAAAAA AAAAAGAATT TTCCTTATCA AGTAGCAAAA AAATTTTTTG AGAGTTTTTT
  TTTTTTTGTT TTTTGTTTTT TTTTTAGCCT GGTTTAAACA G                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145701273	ENSMUSSNP4128937	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52190827					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47038657 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9242	CpG island 9242	972 bp proximal
Gm65860	predicted gene, 65860	1316 bp upstream
Gnmt	glycine N-methyltransferase	within coordinates
Tssr148377	transcription start site region 148377	1408 bp upstream
Tssr148378	transcription start site region 148378	1389 bp upstream
Tssr148379	transcription start site region 148379	1376 bp upstream
Tssr148380	transcription start site region 148380	1013 bp upstream
Tssr148381	transcription start site region 148381	359 bp upstream
Tssr148382	transcription start site region 148382	1427 bp downstream