rs52191649 SNP Detail

Summary

• ID
  rs52191649
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:21425151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTATAATTT TGCTACGGCT
  ATAAACGGTA ATGTAAATAA CTGCAGGGTA CCTGATAATG GGACCCTGCA CCCCCCAAAG
  GGATACTGAC CCAAGGGGTT GAGTACCACT GTGCTAGGTT TTTGGTTTGT TGGGTTTTTT
  TTGGGGGGGG GAGGGGTGTC TGTTTTTGTT GGGTTTTTTG TTGTTGTTTT TCGAGACAGG
  R
  TTTCTGTGTG TGGTCCTGGC TGTCCTGGAA CTCACTCTGT AGACCAGGCT GGCTTCACTG
  TGCTAATTTT TAAAAAACTC CTGATCCACT TTATCATAAC AAGTTTTCAG GATAAGTCCC
  AATTTTAAGT AGTCTTCAAC ATTCACAAGT CAGTATTCAA ATTAAGATTC CAATTTGAAA
  TTCATCTTTG ATTTGACAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss137298238	ENSMUSSNP982271	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52191649					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21425151 () rs orientation: forward

Symbol	Name	Function Class
Adam17	a disintegrin and metallopeptidase domain 17	1518 bp upstream
Cpgi4477	CpG island 4477	943 bp distal
Gm49586	predicted gene, 49586	804 bp downstream
Rr463712	regulatory region 463712	1711 bp distal
Rr463713	regulatory region 463713	1467 bp distal
Rr463714	regulatory region 463714	1586 bp distal
Rr463715	regulatory region 463715	426 bp distal
Rr463716	regulatory region 463716	1406 bp distal
Rr463717	regulatory region 463717	918 bp distal
Tssr112932	transcription start site region 112932	1371 bp downstream
Tssr112933	transcription start site region 112933	893 bp downstream
Tssr115856	transcription start site region 115856	1658 bp upstream
Tssr115857	transcription start site region 115857	1632 bp upstream
Tssr115858	transcription start site region 115858	1604 bp upstream
Tssr115859	transcription start site region 115859	1558 bp upstream
Tssr115860	transcription start site region 115860	1533 bp upstream