rs52192251 SNP Detail

Summary

• ID
  rs52192251
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30065744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGAAGGCT GGAGCTGACC CAAGGACAGG TATCCATGTT
  CCACCCCAGC TTCTCCCCTC AAACTGGTTG CACGCCAATT CTGCGCGCGC GCGCGCGCGC
  A
  CACACACACA CACACACACA CACACACACA CACACACACA CAAATATCTC TCAGCCTAGA
  AATGGTTCCA ATAGCTCAGA GATGTTTTCA TAGCTTTAA                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145436324	ENSMUSSNP6328946	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52192251					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30065744 () rs orientation: forward

Symbol	Name	Function Class
Gm56908	predicted gene, 56908	within coordinates
Mdga1	MAM domain containing glycosylphosphatidylinositol anchor 1	within coordinates
Rr330462	regulatory region 330462	144 bp distal
Rr330463	regulatory region 330463	1657 bp proximal
Rr341132	regulatory region 341132	within coordinates
Rr341133	regulatory region 341133	1998 bp proximal
Rr392501	regulatory region 392501	38 bp upstream
Tssr143596	transcription start site region 143596	235 bp downstream
Tssr143597	transcription start site region 143597	212 bp downstream
Tssr143598	transcription start site region 143598	1450 bp upstream