rs52192714 SNP Detail

Summary

• ID
  rs52192714
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:92491437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGACGCTAG GGGCGCCGCG
  GAGCCGTACT TTACCTTCTC TGCTGGCTCC GTGGAGGACG CGCTGGATCT TAGGCTTCCC
  GCAGACCTGA AGAACCGGCT TAGAACCGTT TGCCTCCCCG GGCCTGGGCC GGCGGCAGTA
  GAGCCTCCCG ACGCGGATTT CCCGCGGGGC ATTGCAGTGT GCAGAAGAGC CGGCCTGCTA
  R
  GAGCGCGAGC GCGCGGCCGC ACTTTCTCGC GCCTGCGCGC GCGCACGCCT CAACCTGTGC
  GGGACCGGCC TTGGGGGCGG AGCCTTAGCT ACACAAATAG AATGCGCGGC GGGCCTTGGT
  GGGGGCGGGG CCTTAGCTGC ACAAATAGGA TGCGCGGCGG GCCTTGGTAG GGGCGGAGCC
  TTAGCTGCAC AAATAGGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52680813	NES15522578	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs52192714					SNP	G	G	G	G	G	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52680813	NES15522578	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:92491437 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5933	CpG island 5933	within coordinates
Dhfr	dihydrofolate reductase	within coordinates
Gm19308	predicted gene, 19308	1421 bp downstream
Msh3	mutS homolog 3	within coordinates
Rr403896	regulatory region 403896	128 bp downstream
Rr483661	regulatory region 483661	193 bp distal
Rr483662	regulatory region 483662	391 bp distal
Rr483663	regulatory region 483663	241 bp distal
Rr483664	regulatory region 483664	46 bp proximal
Tssr120622	transcription start site region 120622	163 bp downstream
Tssr120623	transcription start site region 120623	210 bp upstream
Tssr120624	transcription start site region 120624	257 bp upstream
Tssr120625	transcription start site region 120625	283 bp upstream
Tssr120626	transcription start site region 120626	310 bp upstream
Tssr123429	transcription start site region 123429	409 bp upstream
Tssr123430	transcription start site region 123430	14 bp downstream