rs52193183 SNP Detail

Summary

• ID
  rs52193183
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:25608711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGTACTC AGGAGACTGA
  GACAAGAGAG GTCCAACAGG TTCCAGGCCA GCCTGGGTTA CATGGCGATA TGTTCTCAAG
  GAGTGAGGAG GGAGGGAGGA GAGGGAGGAG GAGAAAGAGA GAGACAGAGA GATCCCTCAA
  GGAGGAGGGG GGGCGGGGGG AGAGAAGCAC CCACATTTGC ACACATTCCT ACACATGTAT
  R
  TTCCTACACA TGTATAATCA CCAGTCCCAG TGAGCTGACC CCAAGCTCGT CTGTCTCCTT
  CGTCAACTCC TCAGACATAC TCCTCCACCC TTCAGGTCTC GGGCTCTGTG GGCTCTGTTC
  CGCAGGGGCC AAATGAAAGC ATAGGATCTC CTGAAACTAA AGTTACAGAC AGTAGTGAGC
  TGCCATGTGG GTGCGGGAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60584249	NES16331451	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs52193183					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60584249	NES16331451	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:25608711 () rs orientation: forward

Symbol	Name	Function Class
Gm63710	predicted gene, 63710	103 bp upstream
Rr400801	regulatory region 400801	441 bp downstream
Rr400802	regulatory region 400802	417 bp upstream
Rr400803	regulatory region 400803	756 bp upstream
Rr661050	regulatory region 661050	141 bp distal
Rr661051	regulatory region 661051	within coordinates
Tssr76672	transcription start site region 76672	413 bp downstream
Tssr80688	transcription start site region 80688	384 bp downstream