rs52193321 SNP Detail

Summary

• ID
  rs52193321
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46321606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAATTTGG AATAAGCACG
  GAAGCGTGGG TTAGGGCTGT GGGGAACATG GTCCTTAGCA TCCTTGTTTA TCCCAGCTTC
  TTGTGGCAGT GTTTCTTTTT AAATTTTAAT TAATGAATTC ACTTACTTAC TTTTACATCC
  AGACTGCGGT TTTTCGTCCT TCCTCTCCTC TCAGTCCTTC CTCCACGCCT TCTCTCTCCT
  S
  CATGCATTCC TCTCCCCTTT CTCTTCAGAA AAGGGGAGGC CCGTGGACAT ACTTCTAATG
  TTTCAGTTAA CAGCCCCCAT GTCTGCTGGG CATGGGGCTG GGATGATGGC TCATCAGATA
  AGAGCACTTG CTGTTCTTGG GCCTGAGTTT AGTTTCCAGC CCCGACATCA GGCAGTTCAC
  AGCCAGCTGT AACTCATGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss149177899	ENSMUSSNP6475469	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52193321					SNP	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46321606 () rs orientation: forward

Symbol	Name	Function Class
Tph1	tryptophan hydroxylase 1	within coordinates
Tssr72530	transcription start site region 72530	116 bp downstream
Tssr72531	transcription start site region 72531	202 bp downstream
Tssr72532	transcription start site region 72532	317 bp downstream
Tssr72533	transcription start site region 72533	329 bp downstream
Tssr72534	transcription start site region 72534	345 bp downstream
Tssr72535	transcription start site region 72535	372 bp downstream