rs52194850 SNP Detail

Summary

• ID
  rs52194850
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:6674859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGTTTATCT GATCCTGATT TAACTTTGGT ACCTGGTATC
  TGTCTAGAAA AGTGTCCATT TCATCCAGAT ATTTTGGTTT GTAGAGTTTA GGGTTTTCTA
  R
  TAGGATCTGA TGATGTTTTG TTTGTTTGTT TGTTTGTTTG CTTGTTTGTT TTTAATTTCC
  TCAGTTTCTG TTGTTATATC TCCAACTTCA TTTCTGATT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss134550104	ENSMUSSNP6316650	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320639631	CHEV_3_6609799	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52194850					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:6674859 () rs orientation: forward

Symbol	Name	Function Class
Gm38291	predicted gene, 38291	1406 bp downstream
Rr374438	regulatory region 374438	862 bp downstream