rs52195656 SNP Detail

Summary

• ID
  rs52195656
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134486944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTCCTTA TACAGTGGCA
  GGCAGTCTTT CCACGAGTTT GGTTGCTTTC TAGATTAAAG AAATCGCCGG GCGGTGGTGG
  CACACGCCTT TAATCCCAGC ACTTGGGAGG CAGAGGCAGG TGGATCTCTG AGTTCGAGGC
  CAGCCTGGTC TACAAAGTGA GTTCCAGGAC AGCCAAGACT ATACAGAGAA ACCCTGTCTC
  A
  AAAAAACAAA ACAAAAAAAA AAAAAAAGAA ATTATGTTTG TGTTCAAGTT CTACTTATGA
  CCTGACTTTT TCTGGGGCCA TCCCCCATCT TTGGATTTCA TGGTTACTTA ACCTCTCAGC
  TCTTCCATTG CTTCCTCTGA AACACTCTGA TCTCTTTCTT TCCTTCAGAC CTGTTGTACC
  TTTTAGCCTG TTGAAAATCT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145508375	ENSMUSSNP4061793	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52195656					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134486944 () rs orientation: forward

Symbol	Name	Function Class
Cpgi773	CpG island 773	680 bp proximal
Kdm5b	lysine demethylase 5B	972 bp upstream
Rr367005	regulatory region 367005	1946 bp downstream
Rr367006	regulatory region 367006	835 bp upstream
Rr418948	regulatory region 418948	1753 bp distal
Rr418949	regulatory region 418949	482 bp proximal
Tssr8904	transcription start site region 8904	951 bp upstream
Tssr8905	transcription start site region 8905	984 bp upstream
Tssr8906	transcription start site region 8906	1008 bp upstream