rs52197404 SNP Detail

Summary

• ID
  rs52197404
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:75422875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATTTTTAAA GTTTTTTTTT AATTAGGTAT TTTCTTCATT
  TACATTTCAA ATGCTATCCC AAAACTCCCC CATATCCCCC ACCACTCCCC TACCCACCCA
  Y
  TCCCACTTCT TGGCCCTAGG GTTCCCCTGT GACATATAAA GTTTGCAAGA CCAAGGGGTC
  TCTCTTCCCA ATGATGGCCA ACTAGGCCAT CTTCTGATA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145083921	ENSMUSSNP3506396	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52197404					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:75422875 () rs orientation: forward

Symbol	Name	Function Class
AU020206	expressed sequence AU020206	within coordinates
Rr380973	regulatory region 380973	1000 bp upstream
Tssr73052	transcription start site region 73052	198 bp upstream
Tssr73053	transcription start site region 73053	939 bp downstream
Tssr73054	transcription start site region 73054	984 bp downstream
Tssr73055	transcription start site region 73055	1006 bp downstream