rs52197444 SNP Detail

Summary

• ID
  rs52197444
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70687335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGGG CCCTGGAGAC CTGGGAGGGC
  K
  GGCCCGGGGT GGGAAGGACT CTGGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss145122511	ENSMUSSNP4797088	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss322699305	CHEV_8_72758584	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs52197444					SNP	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70687335 () rs orientation: forward

Symbol	Name	Function Class
Armc6	armadillo repeat containing 6	236 bp upstream
Cpgi20446	CpG island 20446	within coordinates
Rr400897	regulatory region 400897	30 bp downstream
Sugp2	SURP and G patch domain containing 2	within coordinates
Tssr77717	transcription start site region 77717	457 bp downstream
Tssr77718	transcription start site region 77718	77 bp downstream
Tssr77719	transcription start site region 77719	57 bp downstream
Tssr77720	transcription start site region 77720	30 bp downstream
Tssr81601	transcription start site region 81601	525 bp upstream
Tssr81602	transcription start site region 81602	226 bp upstream