rs52197547 SNP Detail

Summary

• ID
  rs52197547
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:25352451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AGCCAGAGCC AGAGCCAGAG CCAGAGCCAG AGCCAGAGCC
  AGAGCCAGAG TCAGAGCCAG AGCCCCAGAG CCAGAGCCAG AGGCAGAGGC AGAGCCAGAG
  S
  CAGAGCCAGA GGCAGAGCCA GAGCCAGAGC CAGAGCCAGA GCCAGAGCCA GAGCCAGAGC
  CAGGAAGCAG AGTCCTGTCC AGGCCTCAGG TCTGGGAGAT G                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146378525	ENSMUSSNP3328425	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52197547					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25352451 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11321	CpG island 11321	1135 bp distal
Gm74786	predicted gene, 74786	within coordinates
Paxx	non-homologous end joining factor	1345 bp upstream
Rr56431	regulatory region 56431	650 bp distal
Rr396822	regulatory region 396822	1245 bp downstream
Tssr16724	transcription start site region 16724	1218 bp downstream
Tssr22977	transcription start site region 22977	1508 bp upstream
Tssr22978	transcription start site region 22978	1480 bp upstream
Tssr22979	transcription start site region 22979	1456 bp upstream
Tssr22980	transcription start site region 22980	1435 bp upstream
Tssr22981	transcription start site region 22981	1399 bp upstream
Tssr22982	transcription start site region 22982	1359 bp upstream
Tssr22983	transcription start site region 22983	1327 bp upstream
Tssr22984	transcription start site region 22984	1310 bp upstream