rs52198360 SNP Detail

Summary

• ID
  rs52198360
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171016216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTT CTCTCTGTAG ACCAGGACAG
  R
  GAAACCTAAA AAGAGCTCGA AGCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss119995953	PARCsnp_1.12054	PARC_SEQ	INBRED	f	SNP	G	A
ss119997548	PARCsnp_1.01043	PARC_SEQ	INBRED	f	SNP	G	A
ss146156048	ENSMUSSNP3311228	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss320116987	CHEV_1_173118778	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs52198360					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171016216 () rs orientation: forward

Symbol	Name	Function Class
Gm70111	predicted gene, 70111	1014 bp upstream
Pcp4l1	Purkinje cell protein 4-like 1	Intron
Rr423235	regulatory region 423235	11 bp distal
Rr423236	regulatory region 423236	524 bp proximal
Rr423237	regulatory region 423237	1025 bp proximal
Rr423238	regulatory region 423238	1678 bp proximal