rs52198768 SNP Detail

Summary

• ID
  rs52198768
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40962933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGCA CCCCTCCCCC CAAACACACA
  T
  ACACACACAC ACACACACAC ACACA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss144660209	ENSMUSSNP1363385	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52198768					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40962933 () rs orientation: forward

Symbol	Name	Function Class
Cnot7	CCR4-NOT transcription complex, subunit 7	within coordinates
Cpgi20281	CpG island 20281	944 bp proximal
Rr662586	regulatory region 662586	827 bp proximal
Rr662587	regulatory region 662587	1402 bp proximal
Tssr2553	transcription start site region 2553	1324 bp downstream
Tssr2554	transcription start site region 2554	1585 bp upstream
Tssr76955	transcription start site region 76955	1524 bp upstream
Tssr76956	transcription start site region 76956	1877 bp upstream
Tssr76957	transcription start site region 76957	1897 bp upstream
Tssr81046	transcription start site region 81046	584 bp downstream
Tssr81047	transcription start site region 81047	1366 bp downstream
Tssr81048	transcription start site region 81048	1385 bp downstream
Tssr81049	transcription start site region 81049	1406 bp downstream
Tssr81050	transcription start site region 81050	1771 bp downstream
Vps37a	vacuolar protein sorting 37A	1891 bp upstream