rs52198950 SNP Detail

Summary

• ID
  rs52198950
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164710644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGC AGAGGCTATA GAGGGGCACC
  T
  CTTACTGCTG CTCACTGGCT TGCTC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss148232456	ENSMUSSNP4459283	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320606982	CHEV_2_164694224	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs52198950					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164710644 () rs orientation: forward

Symbol	Name	Function Class
D2Mit227	DNA segment, Chr 2, Massachusetts Institute of Technology 227	750 bp proximal
D2Mit342	DNA segment, Chr 2, Massachusetts Institute of Technology 342	761 bp proximal
Gm75526	predicted gene, 75526	within coordinates
Rr40387	regulatory region 40387	1644 bp distal
Rr40388	regulatory region 40388	644 bp distal
Rr47627	regulatory region 47627	757 bp proximal
Rr374207	regulatory region 374207	270 bp downstream