rs52199156 SNP Detail

Summary

• ID
  rs52199156
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:67738396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCGGAGGC GGAGGCAGGC GCTGCGCGGA CAGTATTCGG
  CCGCCAGGCG CAGCGTGCAA CCCCCGCGGC CCAGAGCCAC GCTGGCTTCA GCTTGCAGGC
  K
  CTCGGGATCC GGGCTGCTGG GGACCGGGGG CGCGCAGGAG GCGGCGCGCT CGTGCTCGTC
  GCCGCGGCAC GGGGGGCGCG CGCTGGCCAG ACGTCGAGG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322992777	CHEV_9_67678921	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52199156					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:67738396 () rs orientation: forward

Symbol	Name	Function Class
C2cd4a	C2 calcium-dependent domain containing 4A	Coding-NonSynonymous
Cpgi21983	CpG island 21983	within coordinates
Rr681990	regulatory region 681990	306 bp proximal
Rr681991	regulatory region 681991	1206 bp proximal
Tssr90357	transcription start site region 90357	1211 bp downstream