rs52199422 SNP Detail

Summary

• ID
  rs52199422
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124674704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TGGTTTTTTT GTTTGTTTTG AGCAAAAATG ATGTATCAGA
  ACATATATGC ATCTTACTAT CTTTTTAACC CATCATATAT ACATATATGT GTGTGTGTGT
  R
  TATATGTGTA TATATATATA TATGATTGTA TGATAGATAG ATAGATATCG AAAAGCAAGT
  GCTCTTATCC CCAGAGCCAT CTTTCCATCC CAGAAATTCA C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145836493	ENSMUSSNP2020578	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52199422					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124674704 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21263	CpG island 21263	777 bp proximal
Gm45890	predicted gene 45890	825 bp upstream
Nup133	nucleoporin 133	within coordinates
Rr672577	regulatory region 672577	735 bp proximal
Rr672578	regulatory region 672578	1290 bp proximal
Rr672579	regulatory region 672579	1310 bp proximal
Rr672580	regulatory region 672580	1478 bp proximal
Tssr80007	transcription start site region 80007	1445 bp upstream
Tssr80008	transcription start site region 80008	1481 bp upstream
Tssr83414	transcription start site region 83414	1236 bp downstream