rs52199478 SNP Detail

Summary

• ID
  rs52199478
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181944076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCC CGTTGCTGAG ATAAAATAGC
  R
  TGACAAAAGC CACTTAAGGA AGGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146402304	ENSMUSSNP4031384	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52199478					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181944076 () rs orientation: forward

Symbol	Name	Function Class
Gm33725	predicted gene, 33725	within coordinates
Rr424861	regulatory region 424861	1970 bp distal
Rr424862	regulatory region 424862	719 bp distal
Rr424863	regulatory region 424863	1081 bp distal
Rr424864	regulatory region 424864	218 bp distal
Rr424865	regulatory region 424865	603 bp distal