rs52200007 SNP Detail

Summary

• ID
  rs52200007
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:89340805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTT TGCTGTTTTA ATTTACCTCC
  R
  ATGCAGTTCT AAGCACAGCA AATGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147252823	ENSMUSSNP417951	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss323382127	CHEV_10_88967688	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52200007					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:89340805 () rs orientation: forward

Symbol	Name	Function Class
Nr1h4	nuclear receptor subfamily 1, group H, member 4	within coordinates
Rr436828	regulatory region 436828	35 bp proximal
Rr436829	regulatory region 436829	1696 bp proximal
Tssr98874	transcription start site region 98874	1688 bp downstream