rs52200511 SNP Detail

Summary

• ID
  rs52200511
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:76475276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTTCTGAT AATACACATT
  AATTTGTATT TACGTTAATT AAGATAGGAT TAATTTTAAT AATATTTTGA ATAATACATG
  TAATCATTCT TTAGATAAAT TAATTTAATA CTTATTTTCT TTTAAAATAT AATGAGGGAT
  GAATCATGGT TTCATTTTTA TCCATTTTAT TTTAACATAT CTGTGATATT TTTTAATATA
  A
  TAATGTATTT ACCTTTAAAA ACACTATTAT GGCTTCATTC CATATTAATT TTTTTAAATT
  TTAGCTTAAT AATTTGTATT TGACAAGAAA ATCTGCAAGA TTTAATTTTT AAACCTATGA
  GTTATAAATT TAACATTTTA AGTTTGCTGT GTAATATTTG GCAAGAATAA TATCTATGCT
  TCTTGGTCAA ATTGTTAGAG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss135341140	ENSMUSSNP3487755	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs52200511					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:76475276 () rs orientation: forward

Symbol	Name	Function Class
Fstl5	follistatin-like 5	Intron
Rr578399	regulatory region 578399	427 bp distal