rs52201842 SNP Detail

Summary

• ID
  rs52201842
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123800866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGTATGTGT TTGGGGGTGG GGTATTTTAT TTCAATTTGT
  TTGCTTGGTT TTAAATATTT CTCTTTATTA TTTTTAAGTG TGCGTATGTA TGTGTATGTG
  C
  GTATGTTGTG TGTGAACATG AATGTAGGTG CCTTCAGTGA TCACAGGTAT CAGATCGCCA
  CAGAACTGGC ATTATAGGCT ACATCTCAGT TATGAGCTG                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss149197435	ENSMUSSNP4755	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321671366	CHEV_5_124112812	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52201842					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123800866 () rs orientation: forward

Symbol	Name	Function Class
Clip1	CAP-GLY domain containing linker protein 1	within coordinates
Rr620238	regulatory region 620238	297 bp distal
Rr620239	regulatory region 620239	777 bp proximal
Tssr48802	transcription start site region 48802	572 bp downstream
Tssr53252	transcription start site region 53252	1140 bp upstream
Tssr53253	transcription start site region 53253	1113 bp upstream