rs52202420 SNP Detail

Summary

• ID
  rs52202420
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:82330370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGTGGGT AGGGGATTGG
  GGGGGTGGGT TTGGGGGGAC TTTTGGGATA GCATTGAAAA TGTAAACGAG GAAAATACCT
  AATTTAAAAA AAAACTGCAT TCAAGTTGAG ACACAAGAGA GCCTTCTTCC ATCAGTGAGT
  CAAACACAAA CTTTCTACTC AAATATATTT CTAAGACCCA TGTAAGGTGA GTTAAGCTAT
  R
  AATATATGAC AGGTAGACTC TGAATAATAT TACTACTAAT AATATATATT ATATATAGTC
  AATCATATGC AGTCAATAAA AATTCCTTTT TTGATGCTAT TAAGACTTCT AAACATAGCA
  GCCTTATTTA TAATAGCCAG AAGCTGGAAA GAACCCAGAT GTCCCTCAAC AGAGGAATGA
  ATACAGAAAA TGTGATACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	WSB/EiJ
ss52395342	NES15271138	PERLEGEN	MM_PANEL2	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	WSB/EiJ
rs52202420					SNP	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52395342	NES15271138	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:82330370 () rs orientation: forward

Symbol	Name	Function Class
Gm1553	predicted gene 1553	1918 bp upstream
Tssr98669	transcription start site region 98669	1988 bp upstream
Tssr98670	transcription start site region 98670	1911 bp upstream
Tssr98671	transcription start site region 98671	1891 bp upstream