rs52203494 SNP Detail

Summary

• ID
  rs52203494
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65843095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAAAGTG AAGCAAAGGT
  GAGCTTTCTT CCACGAAGTA GAGTTCCTGA ATCTTACTTG CTGGAAGTTT GAGTAACCGG
  TTGTTTAAAC CTCACACACA CACACATACA CACACATACA CACACACACA CACACACACA
  CACACACACA CACACACACA CACACACACA CACACAGCCA CTTCAGTTGG CTCTGCTTTG
  W
  ATGTACAGTC CCAACCAGAG ACCCCAGGAG TGATTACTTA AGTCCTTCTG TTTCGTCCGA
  GAACCAGCTT CACTGGCCTT TCTTGTTCCA AGATTTGCAG AGAATTGTCA GAAAGACCCC
  ATTTCAGTCA CTGGCATTTC AAAGGGGTTC TTGCAGAGGC AAAAATGGTT CCTATGCTCT
  GAGGACATTT CCTTCACCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60417516	NES15922124	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52203494					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60417516	NES15922124	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65843095 () rs orientation: forward

Symbol	Name	Function Class
Gm37037	predicted gene, 37037	1766 bp upstream
Rr76050	regulatory region 76050	1685 bp distal
Rr76051	regulatory region 76051	190 bp distal
Rr76052	regulatory region 76052	657 bp proximal