rs52204603 SNP Detail

Summary

• ID
  rs52204603
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131567275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TTCCCAGCAC ATATATGGCA GCTCAAACCA TCTGTAACTC
  AAGTTCCAGG GGACCCAAGA CCCTCTTCTA GCCTCCCTGA ATACCAGGCA CATGCATGGT
  A
  CACAGACACA CATGCAGGCA AGACACCAAT GCACATAAAA ACAAAATCAT TTTAAAATTA
  AAAATAAATT CTAATATAAA CTCTTATATA TGTACATTAA T                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145480083	ENSMUSSNP4343784	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52204603					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131567275 () rs orientation: forward

Symbol	Name	Function Class
Ctse	cathepsin E	within coordinates
Rr12195	regulatory region 12195	1875 bp distal
Rr28482	regulatory region 28482	within coordinates
Rr366988	regulatory region 366988	1140 bp downstream
Tssr8635	transcription start site region 8635	1241 bp downstream
Tssr8636	transcription start site region 8636	1199 bp downstream
Tssr8637	transcription start site region 8637	1174 bp downstream
Tssr8638	transcription start site region 8638	1133 bp downstream
Tssr8639	transcription start site region 8639	1053 bp downstream
Tssr8640	transcription start site region 8640	1041 bp downstream