rs52204670 SNP Detail

Summary

• ID
  rs52204670
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79991361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGG AAATGTGAGG CCTTTGGCTC
  C
  AAACTGCCTA TGATTTCCTA AGCAG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145142266	ENSMUSSNP2944819	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322281155	CHEV_7_87486499	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52204670					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79991361 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19331	CpG island 19331	1115 bp distal
Cpgi19332	CpG island 19332	1270 bp proximal
Hddc3	HD domain containing 3	1491 bp upstream
Rr400403	regulatory region 400403	1212 bp downstream
Rr400404	regulatory region 400404	1330 bp upstream
Rr649870	regulatory region 649870	904 bp distal
Rr649871	regulatory region 649871	1245 bp distal
Rr649872	regulatory region 649872	576 bp distal
Rr649873	regulatory region 649873	1010 bp proximal
Rr649874	regulatory region 649874	1454 bp proximal
Tssr67435	transcription start site region 67435	1478 bp upstream
Tssr67436	transcription start site region 67436	1552 bp upstream
Tssr73215	transcription start site region 73215	1603 bp upstream
Tssr73216	transcription start site region 73216	1463 bp upstream
Tssr73217	transcription start site region 73217	1403 bp upstream
Tssr73218	transcription start site region 73218	1382 bp upstream
Unc45a	unc-45 myosin chaperone A	613 bp upstream