rs52204931 SNP Detail

Summary

• ID
  rs52204931
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:70761778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTCTTCT TCTTCTTCTT
  CTTCTTCTTC TTCTTCTTCT TCTTCTTCTT CTTCTTCTTC TTCTTCTTCT TCTTCTTCTT
  CTCCTTCTTC TCCTTCTCCT CCTCCTCCTC TTCCTCCTCC TCCTCCTTCT TCTTCTCCTC
  CTCCTCCTTC TTCTTCTCCT CCTCCTCCTC CTCCTCCTTC TTCTTCTTCT TTTTTTTTTG
  G
  GGGGGGGGAA TGGTGTCAGC AATCAGCATC AAGCCTAGAA GGATAAACCC CACAGGTGGG
  CAGCCCAGCG AAGTCCAACC TCTTGCTTTT CTGATCCTCA GCATAGCCTG CAAGGTCTTG
  TTTATCCCCC GCCTATCCAG AGCCAGCCTA GCATTGAATG CAGAGTAGCT GCTCAGAAAG
  TATTTCTTTG ATAAATGAGG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss146735548	ENSMUSSNP1357551	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs52204931					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70761778 () rs orientation: forward

Symbol	Name	Function Class
Gm39843	predicted gene, 39843	within coordinates
Rr367203	regulatory region 367203	502 bp downstream
Rr367204	regulatory region 367204	190 bp downstream
Rr367205	regulatory region 367205	1678 bp upstream
Rr558632	regulatory region 558632	1205 bp distal
Rr558633	regulatory region 558633	177 bp distal
Rr558634	regulatory region 558634	1341 bp proximal
Tssr18236	transcription start site region 18236	268 bp downstream