rs52205041 SNP Detail

Summary

• ID
  rs52205041
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131565327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cagatttct gagtttgagg ccagcctggt
  ctacaaagtg agtttcagga cagccagggc tatacagaga agccctgtct tggaaaacaa
  caacaacaac aataacaaaa caaaacaaaa caaaacaaaa caaaacCggc tggcgagatg
  A
  ctcggtggat aagagcactg actgctcttc caaaggtcct gagttcaaat cccagcaacc
  acatggtggc tcacaaccat ccgtaatgag atttgacgcc ctcttctggt gtgtctgaag
  acagctacag tgtacttaca tataataaat                                 
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319974766	CHEV_1_133534166	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52205041					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131565327 () rs orientation: forward

Symbol	Name	Function Class
Ctse	cathepsin E	725 bp upstream
Rr12195	regulatory region 12195	within coordinates
Rr28482	regulatory region 28482	273 bp proximal
Rr366988	regulatory region 366988	625 bp upstream
Tssr8635	transcription start site region 8635	681 bp upstream
Tssr8636	transcription start site region 8636	717 bp upstream
Tssr8637	transcription start site region 8637	765 bp upstream
Tssr8638	transcription start site region 8638	799 bp upstream
Tssr8639	transcription start site region 8639	851 bp upstream
Tssr8640	transcription start site region 8640	896 bp upstream