rs52205173 SNP Detail

Summary

• ID
  rs52205173
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:44508790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A ACTCAAAACC AACCAACCAA ACAACCCCCA ACAGCCAGGC
  ATATATCTCT GTTTTTTCTT AATTTTGGTC TTTTCGTTGG ATTTTCCCTT TCTTTTTTTT
  T
  CCCCTCGCCC CCCTCCTTGT TATCGCTCAG TTTTGAGCGA AGGTTTACAT TTTTAAAAAT
  TTTGCTTTTC AGCCCGCCTT GATGTAGCGC GAGTCTCATC G                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss132082943	ENSMUSSNP7064603	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs52205173					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:44508790 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2762	CpG island 2762	660 bp distal
Cpgi2763	CpG island 2763	182 bp proximal
Cpgi2764	CpG island 2764	1809 bp proximal
D11Mit175	DNA segment, Chr 11, Massachusetts Institute of Technology 175	1518 bp proximal
Ebf1	early B cell factor 1	within coordinates
Gm37695	predicted gene, 37695	947 bp upstream
Rr369170	regulatory region 369170	650 bp downstream
Rr445653	regulatory region 445653	636 bp distal
Rr445654	regulatory region 445654	within coordinates
Tssr101029	transcription start site region 101029	661 bp downstream
Tssr101030	transcription start site region 101030	627 bp downstream
Tssr101031	transcription start site region 101031	602 bp downstream
Tssr101032	transcription start site region 101032	566 bp downstream
Tssr101033	transcription start site region 101033	450 bp downstream
Tssr101034	transcription start site region 101034	420 bp downstream
Tssr101035	transcription start site region 101035	405 bp downstream
Tssr101036	transcription start site region 101036	333 bp downstream
Tssr101037	transcription start site region 101037	303 bp downstream
Tssr101038	transcription start site region 101038	260 bp downstream
Tssr101039	transcription start site region 101039	76 bp downstream
Tssr101040	transcription start site region 101040	28 bp downstream
Tssr101041	transcription start site region 101041	161 bp upstream
Tssr101042	transcription start site region 101042	222 bp upstream
Tssr101043	transcription start site region 101043	245 bp upstream
Tssr101044	transcription start site region 101044	615 bp upstream
Tssr107570	transcription start site region 107570	102 bp downstream