rs52205709 SNP Detail

Summary

• ID
  rs52205709
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98941058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGACCACAGA GTCATCTCTT TGGCCCTTGG GTACATCTCT
  TTAAGTAAGA TGGGAAGTGC TTTGAAAGGC TTTCTCACCA CCAGATTTCT TCCTCTCTCC
  R
  TCCTTCTTCT TCCTCCTCCT CCCTCACCAC CTTCCTCTCC TTTTTCTTTC TTACAGTGTA
  AAACTCCAGG CCTCTCACAT GCAATGGACG ATCATTTCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148463665	ENSMUSSNP6601456	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss325079668	CHEV_15_98873608	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52205709					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98941058 () rs orientation: forward

Symbol	Name	Function Class
Gm41399	predicted gene, 41399	within coordinates
Gm62755	predicted gene, 62755	278 bp upstream
Rr509292	regulatory region 509292	1879 bp distal
Rr509293	regulatory region 509293	460 bp distal
Rr509294	regulatory region 509294	1021 bp proximal
Rr509295	regulatory region 509295	1213 bp proximal
Rr509296	regulatory region 509296	1587 bp proximal