rs52206821 SNP Detail

Summary

• ID
  rs52206821
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:87750673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTA GGTGTTTTGA GGCATTTTTT
  W
  AAAAAGTGAA CACATAAATT CTATC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61301455	NES16910371	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	T	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52206821					SNP	A	A	A	A	A	A	A	T	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61301455	NES16910371	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:87750673 () rs orientation: forward

Symbol	Name	Function Class
Igf1	insulin-like growth factor 1	within coordinates
Tssr95088	transcription start site region 95088	1189 bp downstream
Tssr95089	transcription start site region 95089	1172 bp downstream
Tssr95090	transcription start site region 95090	1149 bp downstream
Tssr95091	transcription start site region 95091	1127 bp downstream
Tssr95092	transcription start site region 95092	1109 bp downstream
Tssr95093	transcription start site region 95093	1075 bp downstream
Tssr95094	transcription start site region 95094	1050 bp downstream
Tssr95095	transcription start site region 95095	1042 bp downstream
Tssr95096	transcription start site region 95096	424 bp downstream
Tssr95097	transcription start site region 95097	398 bp downstream
Tssr95098	transcription start site region 95098	272 bp downstream
Tssr95099	transcription start site region 95099	476 bp upstream
Tssr95100	transcription start site region 95100	1490 bp upstream
Tssr95101	transcription start site region 95101	1547 bp upstream
Tssr95102	transcription start site region 95102	1581 bp upstream
Tssr95103	transcription start site region 95103	1616 bp upstream
Tssr95104	transcription start site region 95104	1665 bp upstream
Tssr98816	transcription start site region 98816	510 bp downstream